Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCL17461.1Hypothetical protein. (484 aa)    
Predicted Functional Partners:
SCL27811.1
Acyl carrier protein.
    
 0.801
SCL31021.1
Amino acid adenylation domain-containing protein.
    
 0.793
SCL29061.1
Hypothetical protein.
  
     0.771
SCL15356.1
Methyltransferase domain-containing protein.
    
 0.694
SCL26368.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
    
 0.694
SCL25302.1
Phosphopantetheine attachment site.
    
 0.693
SCL26382.1
Amino acid adenylation domain-containing protein.
    
 0.691
SCL26479.1
Amino acid adenylation domain-containing protein.
    
 0.691
SCL17020.1
Acyl transferase domain-containing protein.
  
 0.676
SCL20016.1
Electron transfer flavoprotein beta subunit.
  
 
 0.649
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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