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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL17761.1Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. (657 aa)    
Predicted Functional Partners:
SCL17751.1
Regulatory helix-turn-helix protein, lysR family; Belongs to the LysR transcriptional regulatory family.
       0.773
SCL17755.1
AAA domain-containing protein.
       0.773
SCL17757.1
Helix-turn-helix domain-containing protein.
       0.773
SCL21827.1
Membrane carboxypeptidase (penicillin-binding protein).
  
     0.666
SCL14911.1
Membrane carboxypeptidase (penicillin-binding protein).
  
     0.637
SCL24435.1
Membrane carboxypeptidase (penicillin-binding protein).
  
     0.611
SCL13083.1
Membrane carboxypeptidase (penicillin-binding protein).
  
     0.609
SCL17764.1
Hypothetical protein.
       0.497
SCL15750.1
Membrane carboxypeptidase (penicillin-binding protein).
  
     0.471
SCL20404.1
Signal peptidase I; Belongs to the peptidase S26 family.
 
    0.444
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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