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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL17854.1Phage integrase family protein. (391 aa)    
Predicted Functional Partners:
SCL17850.1
Phage integrase family protein.
 
     0.959
SCL13298.1
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.641
SCL16869.1
DDE superfamily endonuclease.
  
     0.617
SCL17638.1
DDE superfamily endonuclease.
  
     0.617
SCL17648.1
DDE superfamily endonuclease.
  
     0.617
SCL27474.1
DDE superfamily endonuclease.
  
     0.617
SCL31196.1
DDE superfamily endonuclease.
  
     0.616
SCL18060.1
DDE superfamily endonuclease.
  
     0.613
SCL17857.1
AAA domain-containing protein.
       0.520
SCL17859.1
Integrase core domain-containing protein.
       0.520
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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