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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL17881.1Phage integrase, N-terminal SAM-like domain; Belongs to the 'phage' integrase family. (487 aa)    
Predicted Functional Partners:
SCL13298.1
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.641
SCL13446.1
Hypothetical protein.
  
    0.599
SCL20462.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
  
     0.561
SCL25464.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
  
     0.561
SCL32256.1
Hypothetical protein.
  
     0.513
SCL15176.1
DNA binding domain-containing protein, excisionase family.
 
     0.504
SCL17878.1
DNA binding domain-containing protein, excisionase family.
       0.475
SCL19303.1
Predicted amidophosphoribosyltransferases.
   
    0.424
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
  
    0.419
SCL17883.1
Hypothetical protein.
       0.418
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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