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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL17899.1Lanthionine synthetase C-like protein. (406 aa)    
Predicted Functional Partners:
SCL17903.1
Thiopeptide-type bacteriocin biosynthesis domain-containing protein.
 
   
 0.955
SCL17895.1
Thiopeptide-type bacteriocin biosynthesis domain-containing protein.
 
   
 0.946
SCL24721.1
Thiopeptide-type bacteriocin biosynthesis domain-containing protein.
 
   
 0.811
SCL17893.1
Hypothetical protein.
       0.757
SCL17890.1
protein-L-isoaspartate(D-aspartate) O-methyltransferase; Manually curated.
 
     0.694
SCL17908.1
protein-L-isoaspartate(D-aspartate) O-methyltransferase.
 
     0.660
SCL19801.1
Adenylate cyclase, class 2.
  
     0.601
SCL29522.1
Hypothetical protein.
  
     0.578
SCL12963.1
ATPase family associated with various cellular activities (AAA).
  
     0.572
SCL31629.1
Phosphotransferase enzyme family protein.
 
     0.549
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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