STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL18343.1RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily. (258 aa)    
Predicted Functional Partners:
SCL14292.1
Hypothetical protein.
   
   0.923
SCL18346.1
Hypothetical protein.
       0.789
SCL13182.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.653
SCL18348.1
Hypothetical protein.
       0.636
SCL18336.1
Hypothetical protein.
       0.580
SCL18340.1
Membrane protein YdbS, contains bPH2 (pleckstrin homology) domain.
  
    0.557
SCL18352.1
Multiple antibiotic resistance protein.
       0.538
SCL13349.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.528
SCL18660.1
Protein of unknown function.
  
   0.518
SCL29901.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.517
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.