Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SCL18524.1Membrane protein. (312 aa)    
Predicted Functional Partners:
SCL18528.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
 
     0.785
SCL18523.1
2'-5' RNA ligase.
       0.691
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.622
SCL18532.1
Hypothetical protein.
       0.610
SCL18515.1
Putative hemolysin.
  
    0.532
SCL18889.1
Cell division protein FtsB.
 
     0.486
SCL23680.1
MinD-like ATPase involved in chromosome partitioning or flagellar assembly.
  
     0.483
SCL29411.1
Polyhydroxyalkanoate synthesis regulator phasin.
  
     0.477
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
       0.440
SCL16197.1
MinD-like ATPase involved in chromosome partitioning or flagellar assembly.
  
     0.438
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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