STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL18572.1Cytidine deaminase. (241 aa)    
Predicted Functional Partners:
SCL18576.1
Thymidine phosphorylase.
 
 
 0.998
SCL27017.1
Thymidine kinase.
    
 0.948
SCL15180.1
Purine-nucleoside phosphorylase.
 
 
 0.919
SCL16501.1
LPXTG-motif cell wall anchor domain-containing protein; Belongs to the 5'-nucleotidase family.
 
  
  0.917
SCL14941.1
5'-nucleotidase; Belongs to the 5'-nucleotidase family.
 
  
 0.901
SCL19467.1
Uridine kinase.
    
 0.887
SCL22696.1
5'-nucleotidase.
     
 0.887
SCL18579.1
Protein of unknown function.
       0.863
SCL28652.1
Hypothetical protein.
    
 0.824
SCL18637.1
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
 
 
 0.766
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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