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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL19403.14-amino-4-deoxy-L-arabinose transferase. (537 aa)    
Predicted Functional Partners:
SCL19410.1
Glycosyl hydrolase family 71.
 
     0.944
SCL19399.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 
 0.900
SCL19412.1
Parallel beta-helix repeat (two copies).
 
    0.847
SCL19407.1
Phospholipase C.
       0.773
SCL18082.1
Predicted N-acyltransferase.
  
     0.611
SCL30963.1
Hypothetical protein.
  
     0.492
SCL29298.1
Insertion element 4 transposase N-terminal.
  
     0.460
SCL22472.1
Transposase DDE domain-containing protein.
  
     0.457
SCL27160.1
Transposase DDE domain-containing protein.
  
     0.455
SCL26301.1
Insertion element 4 transposase N-terminal.
  
     0.454
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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