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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL19742.1RNA polymerase sigma-70 factor, ECF subfamily. (211 aa)    
Predicted Functional Partners:
SCL19736.1
Protein-disulfide isomerase.
  
    0.827
SCL16816.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.824
SCL19733.1
Hypothetical protein.
       0.823
SCL19746.1
Predicted anti-sigma-YlaC factor YlaD, contains Zn-finger domain.
 
   0.782
SCL19739.1
Methylamine utilisation protein MauE.
       0.697
SCL13349.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
0.631
SCL29901.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
0.618
SCL19730.1
Peroxiredoxin Q/BCP.
  
    0.597
SCL13182.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
0.592
SCL15791.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
0.577
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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