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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL20462.1DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. (682 aa)    
Predicted Functional Partners:
SCL28960.1
Type VII secretion protein EccB.
  
 
 0.951
SCL16831.1
WXG100 family type VII secretion target; Belongs to the WXG100 family.
   
 
 0.912
SCL18925.1
WXG100 family type VII secretion target; Belongs to the WXG100 family.
   
 
 0.912
SCL18943.1
Type VII secretion integral membrane protein EccD.
  
 
 0.846
SCL14842.1
Type VII secretion integral membrane protein EccD.
  
 
 0.840
SCL15154.1
Hypothetical protein.
 
     0.655
SCL14047.1
Hypothetical protein.
 
     0.645
SCL14065.1
Protein of unknown function.
  
     0.634
SCL15173.1
Protein of unknown function.
  
     0.627
SCL12872.1
Bifunctional DNA primase/polymerase, N-terminal.
 
     0.604
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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