Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCL21695.1Hypothetical protein. (217 aa)    
Predicted Functional Partners:
SCL21671.1
5-methylcytosine-specific restriction endonuclease McrA; Manually curated.
       0.732
SCL21675.1
Hypothetical protein.
       0.732
SCL21678.1
Hypothetical protein.
       0.732
SCL21681.1
Hypothetical protein.
       0.732
SCL21683.1
Phage portal protein.
       0.732
SCL21687.1
Phage prohead protease, HK97 family.
       0.732
SCL21691.1
Phage major capsid protein, HK97 family.
       0.732
SCL21696.1
Hypothetical protein.
       0.658
SCL21700.1
Hypothetical protein.
       0.445
SCL21704.1
Hypothetical protein.
       0.445
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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