Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCL13295.1 | SCL22095.1 | GA0074694_0251 | GA0074694_3256 | Hypothetical protein. | Radical SAM family uncharacterized protein. | 0.699 |
SCL13295.1 | SCL22099.1 | GA0074694_0251 | GA0074694_3257 | Hypothetical protein. | Radical SAM-linked protein. | 0.753 |
SCL22095.1 | SCL13295.1 | GA0074694_3256 | GA0074694_0251 | Radical SAM family uncharacterized protein. | Hypothetical protein. | 0.699 |
SCL22095.1 | SCL22099.1 | GA0074694_3256 | GA0074694_3257 | Radical SAM family uncharacterized protein. | Radical SAM-linked protein. | 0.993 |
SCL22095.1 | SCL22101.1 | GA0074694_3256 | GA0074694_3258 | Radical SAM family uncharacterized protein. | Ribonuclease E. | 0.508 |
SCL22095.1 | rimO | GA0074694_3256 | GA0074694_6106 | Radical SAM family uncharacterized protein. | Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. | 0.482 |
SCL22095.1 | rplU | GA0074694_3256 | GA0074694_3259 | Radical SAM family uncharacterized protein. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.402 |
SCL22099.1 | SCL13295.1 | GA0074694_3257 | GA0074694_0251 | Radical SAM-linked protein. | Hypothetical protein. | 0.753 |
SCL22099.1 | SCL22095.1 | GA0074694_3257 | GA0074694_3256 | Radical SAM-linked protein. | Radical SAM family uncharacterized protein. | 0.993 |
SCL22099.1 | SCL22101.1 | GA0074694_3257 | GA0074694_3258 | Radical SAM-linked protein. | Ribonuclease E. | 0.609 |
SCL22099.1 | obg | GA0074694_3257 | GA0074694_3261 | Radical SAM-linked protein. | GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.421 |
SCL22099.1 | rimO | GA0074694_3257 | GA0074694_6106 | Radical SAM-linked protein. | Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. | 0.447 |
SCL22099.1 | rplU | GA0074694_3257 | GA0074694_3259 | Radical SAM-linked protein. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.456 |
SCL22099.1 | rpmA | GA0074694_3257 | GA0074694_3260 | Radical SAM-linked protein. | LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family. | 0.452 |
SCL22101.1 | SCL22095.1 | GA0074694_3258 | GA0074694_3256 | Ribonuclease E. | Radical SAM family uncharacterized protein. | 0.508 |
SCL22101.1 | SCL22099.1 | GA0074694_3258 | GA0074694_3257 | Ribonuclease E. | Radical SAM-linked protein. | 0.609 |
SCL22101.1 | obg | GA0074694_3258 | GA0074694_3261 | Ribonuclease E. | GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.534 |
SCL22101.1 | rplU | GA0074694_3258 | GA0074694_3259 | Ribonuclease E. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.579 |
SCL22101.1 | rpmA | GA0074694_3258 | GA0074694_3260 | Ribonuclease E. | LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family. | 0.584 |
obg | SCL22099.1 | GA0074694_3261 | GA0074694_3257 | GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | Radical SAM-linked protein. | 0.421 |
page 1 of 2