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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL22604.1Alpha-amylase. (482 aa)    
Predicted Functional Partners:
SCL24342.1
Alpha-1,6-glucosidases, pullulanase-type; Belongs to the glycosyl hydrolase 13 family.
 
 0.817
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 
 0.783
SCL28751.1
(1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase.
  
 
 0.763
SCL18533.1
Alpha-glucosidase.
 
  
  0.750
SCL12960.1
Alpha-glucosidase.
 
  
  0.738
SCL21840.1
Trehalose-phosphatase.
  
 
 0.726
SCL19520.1
Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Belongs to the glycosyl hydrolase 13 family.
  
 
 0.725
SCL28756.1
Glycogen operon protein; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.725
SCL14614.1
Amino acid/polyamine/organocation transporter, APC superfamily.
   
  0.712
SCL17576.1
Hypothetical protein.
   
  0.712
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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