Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCL22975.1Hypothetical protein. (123 aa)    
Predicted Functional Partners:
SCL16660.1
Signal transduction histidine kinase.
  
 0.988
SCL27076.1
GAF domain-containing protein.
  
 0.975
SCL14212.1
HAMP domain-containing protein.
  
 
 0.969
SCL22970.1
Hypothetical protein.
 
     0.900
SCL15588.1
PAS fold-containing protein.
   
 0.897
SCL19476.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.868
SCL32073.1
Signal transduction histidine kinase.
  
 0.862
SCL14021.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.861
SCL18177.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.845
SCL18385.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.829
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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