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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL22980.1Hypothetical protein. (66 aa)    
Predicted Functional Partners:
SCL22986.1
Exoribonuclease R.
 
     0.589
SCL15567.1
NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.
  
     0.559
SCL22981.1
Hypothetical protein.
       0.550
SCL15638.1
Hypothetical protein.
  
     0.518
SCL15770.1
Hypothetical protein.
  
     0.500
SCL31576.1
Hypothetical protein.
  
     0.477
SCL16930.1
Hypothetical protein.
  
     0.426
SCL14842.1
Type VII secretion integral membrane protein EccD.
  
     0.403
SCL22970.1
Hypothetical protein.
 
     0.403
SCL18334.1
Hypothetical protein.
  
     0.402
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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