STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL24234.1Protein N-acetyltransferase, RimJ/RimL family. (207 aa)    
Predicted Functional Partners:
SCL24238.1
Cadmium resistance protein CadD, predicted permease.
       0.757
SCL22857.1
Protein N-acetyltransferase, RimJ/RimL family.
  
     0.686
SCL13298.1
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.679
SCL23810.1
Glutamate synthase (NADH) large subunit.
   
 
  0.627
SCL18177.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.602
SCL18396.1
Ribosomal-protein-alanine N-acetyltransferase.
  
     0.560
SCL14649.1
Protein N-acetyltransferase, RimJ/RimL family.
  
     0.535
SCL15253.1
Hypothetical protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
  0.477
SCL24243.1
Hypothetical protein.
       0.453
SCL13778.1
[SSU ribosomal protein S18P]-alanine acetyltransferase.
   
  
 0.450
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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