STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL25355.1Taurine dioxygenase, alpha-ketoglutarate-dependent. (338 aa)    
Predicted Functional Partners:
SCL31021.1
Amino acid adenylation domain-containing protein.
  
 0.867
SCL27811.1
Acyl carrier protein.
 
 
 0.824
SCL25353.1
Surfactin synthase thioesterase subunit.
 
  
 0.775
SCL25359.1
Amino acid adenylation domain-containing protein.
    0.766
rplK
LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
  
  
  0.685
SCL25348.1
MbtH protein.
 
     0.684
SCL26371.1
HxxPF-repeated domain-containing protein.
 
    0.650
SCL25302.1
Phosphopantetheine attachment site.
  
 0.622
SCL25333.1
Surfactin synthase thioesterase subunit.
 
  
 0.617
SCL25323.1
Amino acid adenylation domain-containing protein.
  
 0.610
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.