close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL25649.1Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family. (142 aa)    
Predicted Functional Partners:
katG
Catalase-peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
 
  
 0.901
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.881
SCL23810.1
Glutamate synthase (NADH) large subunit.
    
 0.868
SCL28420.1
Zinc uptake regulator, Fur family; Belongs to the Fur family.
  
   
 0.706
SCL20179.1
Peroxiredoxin (alkyl hydroperoxide reductase subunit C).
  
  
 0.613
SCL15441.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 0.546
SCL24171.1
Predicted transcriptional regulator, ArsR family.
  
    0.543
SCL18312.1
Predicted CoA-binding protein.
  
    0.502
SCL31680.1
Iron (metal) dependent repressor, DtxR family.
  
  
 0.476
SCL15798.1
Thioredoxin; Belongs to the thioredoxin family.
   
 
 0.465
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.