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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL25928.1CRISPR-associated protein, Cse4 family. (386 aa)    
Predicted Functional Partners:
SCL25936.1
CRISPR-associated protein, Cse3 family.
 
 
 0.997
SCL25921.1
CRISPR-associated protein, Cse1 family.
 
 
 0.996
SCL25925.1
CRISPR-associated protein, Cse2 family.
 
 
 0.996
SCL13526.1
CRISPR type I-E/ECOLI-associated protein CasA/Cse1; Manually curated.
 
 
 0.992
SCL25918.1
CRISPR-associated helicase, Cas3 family.
 
 
 0.992
SCL13519.1
CRISPR-associated protein, Cse2 family.
 
 
 0.991
SCL13512.1
CRISPR system Cascade subunit CasE.
 
 
 0.988
SCL13529.1
CRISPR-associated helicase, Cas3 family.
 
 
 0.988
SCL13522.1
CRISPR-associated protein Cse1 (CRISPR_cse1).
 
 
 0.985
cas1-2
CRISPR-associated protein, Cas1 family; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
  
 0.963
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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