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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL26540.1ABC-type nitrate/sulfonate/bicarbonate transport system, permease component. (257 aa)    
Predicted Functional Partners:
SCL26543.1
NitT/TauT family transport system ATP-binding protein.
 
 0.976
SCL26531.1
ABC-type nitrate/sulfonate/bicarbonate transport system, substrate-binding protein.
 
 
 0.964
SCL13421.1
NitT/TauT family transport system ATP-binding protein.
 
 0.920
SCL29017.1
NitT/TauT family transport system ATP-binding protein.
 
 0.917
SCL13863.1
NitT/TauT family transport system ATP-binding protein.
 
 0.915
SCL29011.1
NitT/TauT family transport system substrate-binding protein.
 
 
 0.884
SCL26535.1
NitT/TauT family transport system permease protein.
 
  
 
0.878
SCL13860.1
NitT/TauT family transport system substrate-binding protein.
 
 
 0.808
SCL13419.1
NitT/TauT family transport system substrate-binding protein.
 
 
 0.806
SCL26546.1
4-hydroxy-2-oxoheptanedioate aldolase; Belongs to the HpcH/HpaI aldolase family.
  
    0.734
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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