Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCL26608.1Hypothetical protein. (743 aa)    
Predicted Functional Partners:
SCL26604.1
VWA domain containing CoxE-like protein.
   
 0.973
SCL26615.1
SWIM zinc finger.
 
     0.958
SCL26610.1
AAA domain (dynein-related subfamily).
 
   
 0.950
efp
Translation initiation factor 5A precursor (eIF-5A) /translation elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 0.917
SCL22836.1
2-oxoisovalerate dehydrogenase E1 component.
   
 
  0.711
SCL18177.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
   
 
  0.704
SCL19585.1
Fe-S cluster assembly iron-binding protein IscA.
    
 
 0.658
SCL23225.1
Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
    
 
 0.658
SCL27076.1
GAF domain-containing protein.
     
 0.579
SCL26619.1
S-adenosyl methyltransferase.
       0.562
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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