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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL26699.1Protein kinase domain-containing protein. (887 aa)    
Predicted Functional Partners:
SCL26688.1
ATP-binding cassette, subfamily C.
 
    0.913
SCL26693.1
ATP-binding cassette, subfamily B.
 
    0.907
SCL26696.1
Hypothetical protein.
       0.773
SCL27076.1
GAF domain-containing protein.
   
 0.735
SCL16660.1
Signal transduction histidine kinase.
  
 0.721
SCL27822.1
Helix-turn-helix domain-containing protein.
  
   0.717
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
  0.642
SCL12849.1
Hypothetical protein.
  
 
   0.590
SCL30595.1
Helix-turn-helix domain-containing protein.
  
 
   0.582
SCL27282.1
Hypothetical protein.
  
 
   0.553
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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