| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| def-4 | rplI | GA0074694_4775 | GA0074694_1335 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | LSU ribosomal protein L9P; Binds to the 23S rRNA. | 0.949 |
| def-4 | rplK | GA0074694_4775 | GA0074694_0573 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.935 |
| def-4 | rplR | GA0074694_4775 | GA0074694_0542 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.943 |
| def-4 | rplU | GA0074694_4775 | GA0074694_3259 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.945 |
| def-4 | rplV | GA0074694_4775 | GA0074694_0553 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.945 |
| def-4 | rplX | GA0074694_4775 | GA0074694_0547 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.938 |
| def-4 | rpsJ | GA0074694_4775 | GA0074694_0559 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.941 |
| def-4 | rpsO | GA0074694_4775 | GA0074694_6132 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.941 |
| def-4 | rpsT | GA0074694_4775 | GA0074694_3282 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA. | 0.938 |
| def-4 | tig | GA0074694_4775 | GA0074694_3231 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.944 |
| rplI | def-4 | GA0074694_1335 | GA0074694_4775 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.949 |
| rplI | rplK | GA0074694_1335 | GA0074694_0573 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.996 |
| rplI | rplR | GA0074694_1335 | GA0074694_0542 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
| rplI | rplU | GA0074694_1335 | GA0074694_3259 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.997 |
| rplI | rplV | GA0074694_1335 | GA0074694_0553 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.996 |
| rplI | rplX | GA0074694_1335 | GA0074694_0547 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.995 |
| rplI | rpsJ | GA0074694_1335 | GA0074694_0559 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.995 |
| rplI | rpsO | GA0074694_1335 | GA0074694_6132 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.995 |
| rplI | rpsT | GA0074694_1335 | GA0074694_3282 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA. | 0.988 |
| rplI | tig | GA0074694_1335 | GA0074694_3231 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.989 |
STRING v12.5 is now available!
