STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL27446.1DNA-binding transcriptional regulator, FadR family. (233 aa)    
Predicted Functional Partners:
SCL29118.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.718
SCL22647.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.690
SCL27448.1
L-lactate dehydrogenase (cytochrome).
  
  
 0.687
SCL25581.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.650
SCL16757.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
    
  0.642
SCL28975.1
Ferredoxin-NADP reductase.
    
  0.642
SCL24886.1
Transcriptional regulator, GntR family.
  
    0.605
SCL27410.1
DNA-binding transcriptional regulator, GntR family; Manually curated.
  
  
 0.458
SCL28967.1
Transcriptional regulator, GntR family.
  
    0.452
SCL26560.1
GntR family transcriptional regulator.
  
    0.420
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.