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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL27646.13',5'-cyclic AMP phosphodiesterase CpdA. (291 aa)    
Predicted Functional Partners:
SCL16660.1
Signal transduction histidine kinase.
  
 
 0.909
SCL27076.1
GAF domain-containing protein.
    
 0.772
SCL18431.1
4'-phosphopantetheinyl transferase EntD (siderophore biosynthesis); Belongs to the P-Pant transferase superfamily.
 
  
 0.702
SCL16501.1
LPXTG-motif cell wall anchor domain-containing protein; Belongs to the 5'-nucleotidase family.
   
 
 0.666
SCL14212.1
HAMP domain-containing protein.
   
 
  0.633
SCL16076.1
DinB superfamily protein.
  
 
 0.631
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
  0.620
SCL18385.1
Diguanylate cyclase (GGDEF) domain-containing protein.
   
 
 0.614
SCL30334.1
Acyl transferase domain-containing protein.
 
   
 0.590
SCL15801.1
N-acetylmuramoyl-L-alanine amidase.
    
  0.568
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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