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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL27881.1Glycosyl transferase family 2. (245 aa)    
Predicted Functional Partners:
SCL27875.1
Cytochrome P450.
 
 
   0.869
SCL27886.1
3-oxoacyl-[acyl-carrier-protein] synthase-3.
 
     0.858
SCL27870.1
Nucleoside-diphosphate-sugar epimerase.
 
 
  0.845
SCL27878.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
     0.833
SCL19476.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.766
SCL14021.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.741
SCL15698.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.695
SCL19106.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.695
SCL31728.1
Cellulase (glycosyl hydrolase family 5); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
 0.651
SCL24342.1
Alpha-1,6-glucosidases, pullulanase-type; Belongs to the glycosyl hydrolase 13 family.
    
 0.600
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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