close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL28276.1Uncharacterized conserved protein YndB, AHSA1/START domain. (212 aa)    
Predicted Functional Partners:
SCL29471.1
DNA-binding transcriptional regulator, ArsR family.
    0.807
SCL26898.1
Regulatory protein, tetR family.
  
     0.538
SCL16909.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.477
SCL26588.1
MEDS: MEthanogen/methylotroph, DcmR Sensory domain.
  
     0.464
SCL28279.1
Polar amino acid transport system substrate-binding protein.
       0.432
SCL28283.1
Cation diffusion facilitator family transporter.
       0.432
SCL23821.1
Dihydrofolate reductase.
 
     0.415
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.