STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL28397.1Major Facilitator Superfamily protein. (433 aa)    
Predicted Functional Partners:
SCL28404.1
ATP-grasp domain-containing protein.
 
     0.841
SCL28411.1
Cysteine synthase.
 
    0.831
SCL28413.1
Diaminopimelate decarboxylase.
 
     0.829
SCL28401.1
ATP-grasp domain-containing protein.
 
     0.804
SCL28407.1
Cysteine desulfurase / selenocysteine lyase.
       0.773
SCL28382.1
Adenylate kinase.
       0.693
SCL28387.1
Iron complex transport system ATP-binding protein.
       0.693
SCL28390.1
Iron complex transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.693
SCL28393.1
Iron complex transport system substrate-binding protein.
       0.693
SCL28418.1
CO dehydrogenase maturation factor.
       0.464
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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