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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL28575.1Probable F420-dependent oxidoreductase, Rv3520c family. (350 aa)    
Predicted Functional Partners:
SCL31021.1
Amino acid adenylation domain-containing protein.
   
 0.878
uppP
Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
       0.855
SCL19174.1
Coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase.
 
  
 0.807
SCL19175.1
LPPG:FO 2-phospho-L-lactate transferase.
 
   
 0.784
SCL31187.1
F420-dependent oxidoreductase, G6PDH family.
  
     0.732
SCL26368.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
   
 0.703
SCL25302.1
Phosphopantetheine attachment site.
   
 0.702
SCL13717.1
Probable F420-dependent oxidoreductase, Rv2161c family.
  
     0.657
SCL29915.1
Deazaflavin-dependent oxidoreductase, nitroreductase family.
  
  
 0.656
SCL12798.1
Hypothetical protein; Partial gene; manually curated.
   
 0.649
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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