STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL28789.1Two-component system, OmpR family, sensor kinase. (487 aa)    
Predicted Functional Partners:
SCL16660.1
Signal transduction histidine kinase.
  
0.991
SCL27076.1
GAF domain-containing protein.
 
 0.987
SCL14212.1
HAMP domain-containing protein.
 
0.984
SCL28793.1
Two-component system, OmpR family, response regulator.
 0.984
SCL13283.1
Two-component system, OmpR family, response regulator.
 0.869
SCL22836.1
2-oxoisovalerate dehydrogenase E1 component.
    
 0.861
SCL19294.1
Two-component system, OmpR family, response regulator MtrA.
 0.843
SCL14334.1
Two-component system, OmpR family, response regulator RegX3.
 0.841
SCL15588.1
PAS fold-containing protein.
 
 
0.835
SCL15472.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain; Manually curated.
 0.813
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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