STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL29097.1Ribose transport system substrate-binding protein. (386 aa)    
Predicted Functional Partners:
SCL29094.1
Ribose transport system ATP-binding protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.994
SCL26577.1
Monosaccharide ABC transporter membrane protein, CUT2 family; Belongs to the binding-protein-dependent transport system permease family.
 
 0.968
SCL29101.1
Ribose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.958
SCL19635.1
Thioredoxin reductase (NADPH).
   
 0.928
SCL26571.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family.
 
 0.928
SCL28815.1
Response regulator receiver domain-containing protein.
   
 0.923
SCL22620.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family.
 
 0.920
SCL24876.1
Mannose ABC transporter ATP-binding protein.
 
 0.915
SCL22624.1
Monosaccharide ABC transporter membrane protein, CUT2 family; Belongs to the binding-protein-dependent transport system permease family.
 
 0.908
SCL24871.1
Mannose ABC transporter membrane protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.907
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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