Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCL16829.1 | SCL29559.1 | GA0074694_1782 | GA0074694_5437 | Type VII secretion protein EccE. | Transporter family-2 protein. | 0.474 |
SCL18823.1 | SCL29559.1 | GA0074694_2479 | GA0074694_5437 | Transporter family-2 protein. | Transporter family-2 protein. | 0.752 |
SCL18823.1 | pyrD | GA0074694_2479 | GA0074694_5463 | Transporter family-2 protein. | Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.541 |
SCL18823.1 | pyrE | GA0074694_2479 | GA0074694_1524 | Transporter family-2 protein. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.557 |
SCL18823.1 | pyrF | GA0074694_2479 | GA0074694_5461 | Transporter family-2 protein. | Orotidine-5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily. | 0.552 |
SCL29555.1 | SCL29559.1 | GA0074694_5436 | GA0074694_5437 | PH domain-containing protein. | Transporter family-2 protein. | 0.771 |
SCL29555.1 | SCL29578.1 | GA0074694_5436 | GA0074694_5442 | PH domain-containing protein. | Nicotinamide mononucleotide transporter. | 0.543 |
SCL29555.1 | hisE | GA0074694_5436 | GA0074694_5439 | PH domain-containing protein. | phosphoribosyl-ATP pyrophosphatase. | 0.696 |
SCL29555.1 | hisG | GA0074694_5436 | GA0074694_5438 | PH domain-containing protein. | ATP phosphoribosyltransferase (homohexameric); Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Long subfamily. | 0.819 |
SCL29559.1 | SCL16829.1 | GA0074694_5437 | GA0074694_1782 | Transporter family-2 protein. | Type VII secretion protein EccE. | 0.474 |
SCL29559.1 | SCL18823.1 | GA0074694_5437 | GA0074694_2479 | Transporter family-2 protein. | Transporter family-2 protein. | 0.752 |
SCL29559.1 | SCL29555.1 | GA0074694_5437 | GA0074694_5436 | Transporter family-2 protein. | PH domain-containing protein. | 0.771 |
SCL29559.1 | SCL29578.1 | GA0074694_5437 | GA0074694_5442 | Transporter family-2 protein. | Nicotinamide mononucleotide transporter. | 0.481 |
SCL29559.1 | SCL30455.1 | GA0074694_5437 | GA0074694_5699 | Transporter family-2 protein. | Peptidase_C39 like family protein. | 0.469 |
SCL29559.1 | hisE | GA0074694_5437 | GA0074694_5439 | Transporter family-2 protein. | phosphoribosyl-ATP pyrophosphatase. | 0.640 |
SCL29559.1 | hisG | GA0074694_5437 | GA0074694_5438 | Transporter family-2 protein. | ATP phosphoribosyltransferase (homohexameric); Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Long subfamily. | 0.789 |
SCL29559.1 | pyrD | GA0074694_5437 | GA0074694_5463 | Transporter family-2 protein. | Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.541 |
SCL29559.1 | pyrE | GA0074694_5437 | GA0074694_1524 | Transporter family-2 protein. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.557 |
SCL29559.1 | pyrF | GA0074694_5437 | GA0074694_5461 | Transporter family-2 protein. | Orotidine-5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily. | 0.552 |
SCL29578.1 | SCL29555.1 | GA0074694_5442 | GA0074694_5436 | Nicotinamide mononucleotide transporter. | PH domain-containing protein. | 0.543 |
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