STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL52051.1Predicted amidophosphoribosyltransferases. (233 aa)    
Predicted Functional Partners:
SCL66540.1
Competence protein ComEC.
 
  
 0.893
SCL52071.1
Two-component system, OmpR family, response regulator MtrA.
  
    0.889
SCL71324.1
PAS/PAC sensor hybrid histidine kinase.
  
  
 0.855
SCL52065.1
Two-component system, OmpR family, sensor histidine kinase MtrB.
  
    0.854
SCL64098.1
Prephenate dehydrogenase.
   
  
 0.845
SCL52058.1
Lipoprotein LpqB beta-propeller domain-containing protein.
       0.843
SCL61273.1
N-acetylglucosamine 6-phosphate deacetylase.
  
    0.830
SCL47876.1
Oxygen-dependent protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
  
    0.821
xerC
Integrase/recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
   
    0.809
SCL72524.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
   
    0.809
Your Current Organism:
Micromonospora peucetia
NCBI taxonomy Id: 47871
Other names: DSM 43363, JCM 12820, M. peucetia, Micromonospora peucetia Kroppenstedt et al. 2005, Micromonospora peucetica, NBRC 101886
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.