STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL56306.1ABC-2 type transport system permease protein. (245 aa)    
Predicted Functional Partners:
SCL55303.1
ABC-2 type transport system ATP-binding protein.
  
 0.982
SCL74027.1
Teichoic acid transport system ATP-binding protein.
  
 0.982
SCL56300.1
ABC-2 type transport system ATP-binding protein.
 
     0.938
SCL51074.1
Glycosyltransferase involved in cell wall bisynthesis.
  
  
 0.706
SCL73528.1
Uncharacterised nucleotidyltransferase.
  
  
 0.701
SCL72420.1
Nucleotidyl transferase AbiEii toxin, Type IV TA system.
  
     0.636
SCL45538.1
Nucleotidyl transferase AbiEii toxin, Type IV TA system.
  
     0.601
SCL56293.1
DNA helicase IV.
       0.601
SCL73133.1
Hypothetical protein.
  
    0.557
SCL69599.1
ABC-2 type transport system permease protein.
  
  
  0.550
Your Current Organism:
Micromonospora peucetia
NCBI taxonomy Id: 47871
Other names: DSM 43363, JCM 12820, M. peucetia, Micromonospora peucetia Kroppenstedt et al. 2005, Micromonospora peucetica, NBRC 101886
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