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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL66007.1Nitroimidazol reductase NimA, pyridoxamine 5'-phosphate oxidase superfamily. (172 aa)    
Predicted Functional Partners:
SCL73081.1
Proteasome assembly chaperone (PAC2) family protein.
   
    0.465
SCL73950.1
Predicted ATP-dependent carboligase, ATP-grasp superfamily.
   
    0.465
SCL71436.1
Aromatase.
  
     0.423
SCL55536.1
Putative transposase.
  
     0.417
SCL67510.1
Putative transposase.
  
     0.417
SCL71083.1
Putative transposase.
  
     0.417
SCL71440.1
Putative monooxygenase.
  
     0.416
Your Current Organism:
Micromonospora peucetia
NCBI taxonomy Id: 47871
Other names: DSM 43363, JCM 12820, M. peucetia, Micromonospora peucetia Kroppenstedt et al. 2005, Micromonospora peucetica, NBRC 101886
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.