Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SCL66007.1Nitroimidazol reductase NimA, pyridoxamine 5'-phosphate oxidase superfamily. (172 aa)    
Predicted Functional Partners:
SCL73081.1
Proteasome assembly chaperone (PAC2) family protein.
   
    0.483
SCL73950.1
Predicted ATP-dependent carboligase, ATP-grasp superfamily.
   
    0.483
SCL71436.1
Aromatase.
  
     0.423
SCL55536.1
Putative transposase.
  
     0.417
SCL67510.1
Putative transposase.
  
     0.417
SCL71083.1
Putative transposase.
  
     0.417
SCL71440.1
Putative monooxygenase.
 
     0.417
Your Current Organism:
Micromonospora peucetia
NCBI taxonomy Id: 47871
Other names: DSM 43363, JCM 12820, M. peucetia, Micromonospora peucetia Kroppenstedt et al. 2005, Micromonospora peucetica, NBRC 101886
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