STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ00538.1Outer membrane receptor proteins, mostly Fe transport. (816 aa)    
Predicted Functional Partners:
SER25309.1
Beta-barrel assembly machine subunit BamD.
  
     0.611
SEQ65857.1
Membrane protein YfhO.
  
     0.591
SEQ99766.1
TonB-linked outer membrane protein, SusC/RagA family.
  
  
  0.584
SER31534.1
Por secretion system C-terminal sorting domain-containing protein.
  
 
   0.571
SEP97179.1
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
   0.569
SEP58209.1
TonB-linked outer membrane protein, SusC/RagA family.
  
  
  0.563
SEQ47168.1
TonB-linked outer membrane protein, SusC/RagA family.
  
  
  0.559
SER17073.1
Protein of unknown function.
  
     0.539
SER24715.1
TonB family C-terminal domain-containing protein.
  
   0.537
SEP59792.1
TonB-linked outer membrane protein, SusC/RagA family.
  
  
  0.525
Your Current Organism:
Lewinella agarilytica
NCBI taxonomy Id: 478744
Other names: DSM 24740, JBRI 2009, JCM 14216, KCTC 12774, L. agarilytica, Lewinella agarilytica Lee 2007, strain SST-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.