STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ00984.1TonB-linked outer membrane protein, SusC/RagA family. (1029 aa)    
Predicted Functional Partners:
SEQ00947.1
Starch-binding associating with outer membrane.
 
     0.927
SEQ66058.1
RagB/SusD domain-containing protein.
 
     0.756
SEQ06543.1
Starch-binding associating with outer membrane.
  
     0.751
SEP59769.1
RagB/SusD domain-containing protein.
  
     0.744
SEQ09782.1
Starch-binding associating with outer membrane.
  
     0.728
SER10296.1
TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region.
  
  
  0.727
SEQ09045.1
Starch-binding associating with outer membrane.
  
     0.723
SEQ09696.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.698
SEQ99735.1
SusD family protein.
  
     0.658
SEQ09138.1
alpha-L-rhamnosidase.
  
     0.654
Your Current Organism:
Lewinella agarilytica
NCBI taxonomy Id: 478744
Other names: DSM 24740, JBRI 2009, JCM 14216, KCTC 12774, L. agarilytica, Lewinella agarilytica Lee 2007, strain SST-19
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