STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ04367.1Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily. (344 aa)    
Predicted Functional Partners:
SEQ32266.1
Phytoene/squalene synthetase.
  
 0.710
SER01413.1
Protein of unknown function.
   
 0.635
SEQ04338.1
Zn-dependent amino-or carboxypeptidase, M28 family.
       0.524
SER34653.1
Diacylglycerol kinase catalytic domain-containing protein.
   
 0.496
SEP57010.1
Hypothetical protein; Belongs to the cytochrome P450 family.
   
 0.477
SEQ80941.1
Cytochrome P450.
   
 0.477
SEQ84592.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
   
 
  0.463
SEP78575.1
Alkane 1-monooxygenase.
 
 
 0.458
Your Current Organism:
Lewinella agarilytica
NCBI taxonomy Id: 478744
Other names: DSM 24740, JBRI 2009, JCM 14216, KCTC 12774, L. agarilytica, Lewinella agarilytica Lee 2007, strain SST-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.