Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEP67908.1 | SEQ13694.1 | SAMN05444359_101447 | SAMN05444359_10633 | GTP cyclohydrolase II. | Hypothetical protein. | 0.495 |
SEP67908.1 | SER13739.1 | SAMN05444359_101447 | SAMN05444359_12529 | GTP cyclohydrolase II. | PAS domain S-box-containing protein. | 0.940 |
SEP67908.1 | ribA | SAMN05444359_101447 | SAMN05444359_117112 | GTP cyclohydrolase II. | GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. | 0.834 |
SEP67908.1 | ribB | SAMN05444359_101447 | SAMN05444359_101247 | GTP cyclohydrolase II. | 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.852 |
SEP77090.1 | SEQ13694.1 | SAMN05444359_102130 | SAMN05444359_10633 | Polyketide synthase PksN. | Hypothetical protein. | 0.694 |
SEP77090.1 | SEQ32161.1 | SAMN05444359_102130 | SAMN05444359_10859 | Polyketide synthase PksN. | Protein of unknown function. | 0.622 |
SEP77090.1 | SER31651.1 | SAMN05444359_102130 | SAMN05444359_13427 | Polyketide synthase PksN. | Choice-of-anchor B domain-containing protein. | 0.515 |
SEQ13694.1 | SEP67908.1 | SAMN05444359_10633 | SAMN05444359_101447 | Hypothetical protein. | GTP cyclohydrolase II. | 0.495 |
SEQ13694.1 | SEP77090.1 | SAMN05444359_10633 | SAMN05444359_102130 | Hypothetical protein. | Polyketide synthase PksN. | 0.694 |
SEQ13694.1 | SEQ13726.1 | SAMN05444359_10633 | SAMN05444359_10634 | Hypothetical protein. | Arylsulfate sulfotransferase. | 0.773 |
SEQ13694.1 | SEQ13993.1 | SAMN05444359_10633 | SAMN05444359_10641 | Hypothetical protein. | Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB. | 0.443 |
SEQ13694.1 | SEQ32161.1 | SAMN05444359_10633 | SAMN05444359_10859 | Hypothetical protein. | Protein of unknown function. | 0.549 |
SEQ13694.1 | SER13739.1 | SAMN05444359_10633 | SAMN05444359_12529 | Hypothetical protein. | PAS domain S-box-containing protein. | 0.481 |
SEQ13694.1 | SER31651.1 | SAMN05444359_10633 | SAMN05444359_13427 | Hypothetical protein. | Choice-of-anchor B domain-containing protein. | 0.414 |
SEQ13694.1 | iscS | SAMN05444359_10633 | SAMN05444359_10632 | Hypothetical protein. | Cysteine desulfurase IscS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | 0.476 |
SEQ13694.1 | ribA | SAMN05444359_10633 | SAMN05444359_117112 | Hypothetical protein. | GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. | 0.495 |
SEQ13694.1 | ribB | SAMN05444359_10633 | SAMN05444359_101247 | Hypothetical protein. | 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.495 |
SEQ13726.1 | SEQ13694.1 | SAMN05444359_10634 | SAMN05444359_10633 | Arylsulfate sulfotransferase. | Hypothetical protein. | 0.773 |
SEQ13726.1 | iscS | SAMN05444359_10634 | SAMN05444359_10632 | Arylsulfate sulfotransferase. | Cysteine desulfurase IscS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | 0.476 |
SEQ13993.1 | SEQ13694.1 | SAMN05444359_10641 | SAMN05444359_10633 | Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB. | Hypothetical protein. | 0.443 |
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