STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ12853.1Hypothetical protein. (55 aa)    
Predicted Functional Partners:
SEQ12881.1
Hypothetical protein.
      
0.757
SEQ12827.1
Hypothetical protein.
      
0.714
SEQ12916.1
Hypothetical protein.
      
0.699
SEQ12948.1
Hypothetical protein.
      
0.684
SEQ12976.1
Hypothetical protein.
       0.670
SEQ12770.1
Hypothetical protein.
      
0.660
SEQ12798.1
Hypothetical protein.
      
0.660
SEQ12718.1
Hypothetical protein.
      
0.646
SEQ13007.1
Hypothetical protein.
      
0.620
SEQ12688.1
Hypothetical protein.
       0.598
Your Current Organism:
Lewinella agarilytica
NCBI taxonomy Id: 478744
Other names: DSM 24740, JBRI 2009, JCM 14216, KCTC 12774, L. agarilytica, Lewinella agarilytica Lee 2007, strain SST-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.