STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ24862.1Repeat domain-containing protein. (1116 aa)    
Predicted Functional Partners:
SEQ24774.1
FG-GAP repeat-containing protein.
 
    
0.789
SEQ08537.1
PAP2 superfamily protein.
  
    0.775
SEQ24807.1
Hypothetical protein.
       0.773
SEQ92924.1
PAP2 superfamily protein.
  
    0.759
SER32884.1
PAP2 superfamily protein.
  
    0.752
SEQ24892.1
Inhibitor of the KinA pathway to sporulation, predicted exonuclease.
       0.678
SEQ52067.1
Glycosyl hydrolase family 65, N-terminal domain.
  
     0.658
SEP58286.1
Repeat domain-containing protein.
  
     0.492
SEQ64669.1
Protein of unknown function.
  
     0.486
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.477
Your Current Organism:
Lewinella agarilytica
NCBI taxonomy Id: 478744
Other names: DSM 24740, JBRI 2009, JCM 14216, KCTC 12774, L. agarilytica, Lewinella agarilytica Lee 2007, strain SST-19
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.