STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ33412.1Hypothetical protein. (232 aa)    
Predicted Functional Partners:
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
 
     0.819
SEQ33440.1
Uncharacterized conserved protein, DUF1499 family.
       0.773
SEP90954.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.720
SEQ98018.1
Outer membrane protein beta-barrel family protein.
  
     0.693
SEP73181.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.681
SEQ64233.1
Putative porin.
  
     0.676
SER00896.1
Hypothetical protein.
  
     0.654
SEP56388.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.649
SER23372.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.648
SER03502.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.645
Your Current Organism:
Lewinella agarilytica
NCBI taxonomy Id: 478744
Other names: DSM 24740, JBRI 2009, JCM 14216, KCTC 12774, L. agarilytica, Lewinella agarilytica Lee 2007, strain SST-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.