Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEP68370.1 | SEP73273.1 | SAMN05444359_101460 | SAMN05444359_10212 | Hypothetical protein. | Small subunit ribosomal protein S1. | 0.887 |
SEP68370.1 | fusA | SAMN05444359_101460 | SAMN05444359_1049 | Hypothetical protein. | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.958 |
SEP68370.1 | rplM | SAMN05444359_101460 | SAMN05444359_10949 | Hypothetical protein. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.957 |
SEP68370.1 | rpsB | SAMN05444359_101460 | SAMN05444359_10951 | Hypothetical protein. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.957 |
SEP68370.1 | rpsI | SAMN05444359_101460 | SAMN05444359_10950 | Hypothetical protein. | SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. | 0.924 |
SEP68370.1 | tsf | SAMN05444359_101460 | SAMN05444359_10952 | Hypothetical protein. | Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.978 |
SEP73273.1 | SEP68370.1 | SAMN05444359_10212 | SAMN05444359_101460 | Small subunit ribosomal protein S1. | Hypothetical protein. | 0.887 |
SEP73273.1 | SEQ85883.1 | SAMN05444359_10212 | SAMN05444359_11755 | Small subunit ribosomal protein S1. | Hypothetical protein. | 0.887 |
SEP73273.1 | fusA | SAMN05444359_10212 | SAMN05444359_1049 | Small subunit ribosomal protein S1. | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.888 |
SEP73273.1 | rplM | SAMN05444359_10212 | SAMN05444359_10949 | Small subunit ribosomal protein S1. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.975 |
SEP73273.1 | rpsB | SAMN05444359_10212 | SAMN05444359_10951 | Small subunit ribosomal protein S1. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.989 |
SEP73273.1 | rpsI | SAMN05444359_10212 | SAMN05444359_10950 | Small subunit ribosomal protein S1. | SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. | 0.972 |
SEP73273.1 | tsf | SAMN05444359_10212 | SAMN05444359_10952 | Small subunit ribosomal protein S1. | Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.952 |
SEP73273.1 | tuf | SAMN05444359_10212 | SAMN05444359_11161 | Small subunit ribosomal protein S1. | Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.887 |
SEQ85883.1 | SEP73273.1 | SAMN05444359_11755 | SAMN05444359_10212 | Hypothetical protein. | Small subunit ribosomal protein S1. | 0.887 |
SEQ85883.1 | fusA | SAMN05444359_11755 | SAMN05444359_1049 | Hypothetical protein. | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.958 |
SEQ85883.1 | rplM | SAMN05444359_11755 | SAMN05444359_10949 | Hypothetical protein. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.957 |
SEQ85883.1 | rpsB | SAMN05444359_11755 | SAMN05444359_10951 | Hypothetical protein. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.957 |
SEQ85883.1 | rpsI | SAMN05444359_11755 | SAMN05444359_10950 | Hypothetical protein. | SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. | 0.924 |
SEQ85883.1 | tsf | SAMN05444359_11755 | SAMN05444359_10952 | Hypothetical protein. | Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.978 |
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