STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ47594.1Sugar phosphate isomerase/epimerase. (326 aa)    
Predicted Functional Partners:
SEQ52999.1
Protein of unknown function.
  
     0.685
SEQ70958.1
Tat (twin-arginine translocation) pathway signal sequence.
  
 
  0.601
SER28913.1
Stress responsive A/B Barrel Domain.
  
     0.523
SEQ15274.1
Predicted arabinose efflux permease, MFS family.
 
     0.485
SEQ47565.1
Pimeloyl-ACP methyl ester carboxylesterase.
       0.467
SEQ82305.1
Tat (twin-arginine translocation) pathway signal sequence.
 
 
  0.462
SER21188.1
Predicted dehydrogenase.
  
 
  0.410
SEQ70549.1
Predicted dehydrogenase.
 
 
  0.402
Your Current Organism:
Lewinella agarilytica
NCBI taxonomy Id: 478744
Other names: DSM 24740, JBRI 2009, JCM 14216, KCTC 12774, L. agarilytica, Lewinella agarilytica Lee 2007, strain SST-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.