STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ46078.1TIGR02757 family protein. (261 aa)    
Predicted Functional Partners:
SEQ25896.1
Exodeoxyribonuclease-3.
  
 0.803
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.626
SEQ46050.1
Por secretion system C-terminal sorting domain-containing protein; Belongs to the peptidase S8 family.
       0.532
SEQ13312.1
Thioredoxin.
  
     0.510
SER07957.1
Hypothetical protein.
 
     0.506
SER00795.1
formamidopyrimidine-DNA glycosylase.
   
  
 0.491
SEQ24644.1
Flagellar motor protein MotB.
  
 
   0.467
SEQ31177.1
A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs.
  
 
 0.460
ung
Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
    
 0.449
SEQ46029.1
Hypothetical protein.
       0.415
Your Current Organism:
Lewinella agarilytica
NCBI taxonomy Id: 478744
Other names: DSM 24740, JBRI 2009, JCM 14216, KCTC 12774, L. agarilytica, Lewinella agarilytica Lee 2007, strain SST-19
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