STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ53955.1Predicted dehydrogenase. (375 aa)    
Predicted Functional Partners:
SEP64592.1
Sugar phosphate isomerase/epimerase.
 
 
  0.825
SER21456.1
Sugar phosphate isomerase/epimerase.
  
 
  0.716
SEP56008.1
Sugar phosphate isomerase/epimerase.
 
 
  0.503
SEP58165.1
Predicted dehydrogenase.
  
     0.501
SEQ75385.1
Sugar phosphate isomerase/epimerase.
 
 
  0.488
SER19611.1
Protein of unknown function.
 
     0.488
SEQ53989.1
Hypothetical protein.
       0.486
SEP87600.1
Gluconate 2-dehydrogenase subunit 3.
 
 
  0.481
SEQ50809.1
Predicted dehydrogenase.
  
     0.452
SEQ20294.1
Sugar phosphate isomerase/epimerase.
 
 
  0.428
Your Current Organism:
Lewinella agarilytica
NCBI taxonomy Id: 478744
Other names: DSM 24740, JBRI 2009, JCM 14216, KCTC 12774, L. agarilytica, Lewinella agarilytica Lee 2007, strain SST-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.