STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ68918.1Protein of unknown function. (190 aa)    
Predicted Functional Partners:
SER21541.1
Protein of unknown function.
  
     0.774
SEQ68894.1
Hypothetical protein.
       0.773
SER10515.1
uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
     0.765
SEQ74064.1
Hypothetical protein.
 
     0.754
SER05401.1
Hypothetical protein.
  
     0.748
SEQ65857.1
Membrane protein YfhO.
  
     0.743
SEQ66217.1
Hypothetical protein.
  
     0.730
SER01696.1
Carboxypeptidase regulatory-like domain-containing protein.
  
     0.726
SEQ15713.1
Hypothetical protein.
  
     0.725
SER27980.1
Lipopolysaccharide-assembly.
  
     0.724
Your Current Organism:
Lewinella agarilytica
NCBI taxonomy Id: 478744
Other names: DSM 24740, JBRI 2009, JCM 14216, KCTC 12774, L. agarilytica, Lewinella agarilytica Lee 2007, strain SST-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.