STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ77883.1RNA polymerase sigma-70 factor, ECF subfamily. (160 aa)    
Predicted Functional Partners:
SER35887.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.774
SEQ19487.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.773
SEQ77830.1
Hypothetical protein.
       0.773
SEQ77856.1
Hypothetical protein.
       0.773
SEQ76102.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.769
SEQ97471.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.769
SER03882.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.764
SEP58657.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.762
SEQ32133.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.752
SER41636.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.747
Your Current Organism:
Lewinella agarilytica
NCBI taxonomy Id: 478744
Other names: DSM 24740, JBRI 2009, JCM 14216, KCTC 12774, L. agarilytica, Lewinella agarilytica Lee 2007, strain SST-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.