STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ94244.1Planctomycete cytochrome C. (907 aa)    
Predicted Functional Partners:
SEQ27430.1
Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family.
  
 0.998
SEP68508.1
Prokaryotic molybdopterin-containing oxidoreductase family, iron-sulfur binding subunit.
  
 0.985
SEQ94269.1
Protein of unknown function.
 
     0.874
SEP98025.1
Hypothetical protein.
 
  0.851
SEQ06431.1
Hypothetical protein.
 
  0.851
SEQ34407.1
Peptidylglycine monooxygenase.
 
  0.851
SEQ25043.1
Cytochrome c.
 
 
 0.803
SER13048.1
Hypothetical protein.
   
 0.785
SEP98058.1
Uncharacterized membrane protein.
 
     0.781
SEQ23793.1
Protein of unknown function.
 
     0.775
Your Current Organism:
Lewinella agarilytica
NCBI taxonomy Id: 478744
Other names: DSM 24740, JBRI 2009, JCM 14216, KCTC 12774, L. agarilytica, Lewinella agarilytica Lee 2007, strain SST-19
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.